チームディレクター
大浪修一 D.V.M., Ph.D.

発生動態研究チーム

E-mail sonami[at]riken.jp

[at]を@に変えてください

主要論文

Kyoda K, Itoga H, Yamagata Y, et al.
SSBD: an ecosystem for enhanced sharing and reuse of bioimaging data.
Nucleic Acids Research 53(D1), D1716-D1723 (2025) doi: 10.1093/nar/gkae860

Shinkai S, Onami S, Miyaguchi T.
Generalized Langevin dynamics for single beads in linear elastic networks.
Physical Review. E 110(4), 044136 (2024) doi: 10.1103/PhysRevE.110.044136

Nozaki T, Shinkai S, Ide S, et al.
Condensed but liquid-like domain organization of active chromatin regions in living human cells.
Science Advances 9(14), eadf1488 (2023) doi: 10.1126/sciadv.adf1488

Hirata T, Tohsato Y, Itoga H, et al.
NeuroGT: A brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons.
Cell Reports Methods 1, 100012 (2021) doi: 10.1016/j.crmeth.2021.100012

Swedlow JR, Kankaanpää P, Sarkans U, et al.
A global view of standards for open image data formats and repositories.
Nature Methods 18, 1440-1446 (2021) doi: 10.1038/s41592-021-01113-7

Shinkai S, Nakagawa M, Sugawara T, et al.
PHi-C: deciphering Hi-C data into polymer dynamics.
NAR Genomics and Bioinformatics 2, lqaa020 (2020) doi: 10.1093/nargab/lqaa020

Takayama J, Onami S.
The sperm TRP-3 channel mediates the onset of a Ca²⁺ wave in the fertilized C. elegans oocyte.
Cell Reports 15(3), 625-637 (2016) doi: 10.1016/j.celrep.2016.03.040

Tohsato Y, Ho KHL, Kyoda K, Onami S.
SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena.
Bioinformatics 32(22), 3471-3479 (2016) doi: 10.1093/bioinformatics/btw417

Kyoda K, Adachi E, Masuda E, et al.
WDDD: Worm developmental dynamics database.
Nucleic Acids Research 41, D732-D737 (2013) doi: 10.1093/nar/gks1107

Kimura A, Onami S.
Computer simulations and image processing reveal length-dependent pulling force as the primary mechanism for C. elegans male pronuclear migration.
Developmental Cell 8, 765-775 (2005) doi: 10.1016/j.devcel.2005.03.007