Team Director
Haruka Ozaki Ph.D.

Matsuzawa R, Kawahara D, Kashima M, et al.
tomoseqr: A Bioconductor package for spatial reconstruction and visualization of 3D gene expression patterns based on RNA tomography.
PLOS ONE 20(1), e0311296 (2025) doi: 10.1371/journal.pone.0311296

Ochiai K, Tahara-Arai Y, Kato A, et al.
Automating Care by Self‐maintainability for Full Laboratory Automation.
Digital Discovery (2025) doi: 10.1039/D5DD00151J

Nakata S, Iwasaki K, Funato H, et al.
Neuronal subtype-specific transcriptomic changes in the cerebral neocortex associated with sleep pressure.
Neuroscience Research 207, 13-25 (2024) doi: 10.1016/j.neures.2024.03.004

Tahara S, Tsuchiya T, Matsumoto H, Ozaki H.
Transcription factor-binding k-mer analysis clarifies the cell type dependency of binding specificities and cis-regulatory SNPs in humans.
BMC Genomics 24(1), 597 (2023) doi: 10.1186/s12864-023-09692-9

Arai Y, Takahashi K, Horinouchi T, et al.
SAGAS: Simulated annealing and greedy algorithm scheduler for laboratory automation.
SLAS Technology 28(4), 264-277 (2023) doi: 10.1016/j.slast.2023.03.001

Inagaki T, Kato A, Takahashi K, et al.
LLMs can generate robotic scripts from goal-oriented instructions in biological laboratory automation.
arXiv (2023) doi: 10.48550/arXiv.2304.10267

Tsuchiya T, Hori H, Ozaki H.
CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells.
Bioinformatics 38(21), 4868-4877 (2022) doi: 10.1093/bioinformatics/btac599

Itoh TD, Horinouchi T, Uchida H, et al.
Optimal Scheduling for Laboratory Automation of Life Science Experiments with Time Constraints.
SLAS Technology 26(6), 650-659 (2021) doi: 10.1177/24726303211021790

Minoshima F, Ozaki H, Odaka H, Tateno H.
Integrated analysis of glycan and RNA in single cells.
iScience 24(8), 102882 (2021) doi: 10.1016/j.isci.2021.102882

Ozaki H, Hayashi T, Umeda M, Nikaido I.
Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets.
BMC Genomics 21(1), 177 (2020) doi: 10.1186/s12864-020-6542-z