Laboratory for Protein Functional and Structural Biology | RIKEN BDR

Laboratory for Protein Functional and Structural Biology

Team Leader

Mikako ShirouzuPh.D.

  • Location:Yokohama
  • E-mail:mikako.shirouzu[at]riken.jpPlease replace [at] with @.

Establishment of a structural analysis technology platform that contributes to "life innovation" such as drug development and medical treatment.

Research Summary

The high-resolution structural information of proteins related to diseases shall increasingly become important for drug development leading to future individualized medicine. We plan to establish a structural analysis technology platform to contribute to "Life innovation" such as drug discovery as well as development of methods for the sample preparation of challenging proteins including membrane proteins/biomolecular complexes and for the structural analysis by cryo-electron microscopy (cryo-EM). The 3D-structural information will be used for in-silico screening/design of chemical compounds and for dynamic structural analysis toward simulation research of cell function.

cryo-EM (FEI Tecnai Arctica)

Research Theme

  • Three-dimensional structure determination for drug development
  • Development of methods for preparing difficult proteins including membrane proteins
  • Structural analysis for huge complex of biomolecules by cryo-EM

Main Publications List

  • Yokoyama T, Machida K, Iwasaki W, et al.
    HCV IRES Captures an Actively Translating 80S Ribosome.
    Molecular cell doi: 10.1016/j.molcel.2019.04.022
  • Kashiwagi K, Yokoyama T, Nishimoto M, et al.
    Structural basis for eIF2B inhibition in integrated stress response.
    Science 364(6439). 495-499 (2019) doi: 10.1126/science.aaw4104
  • Ehara H, Kujirai T, Fujino Y,
    Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
    Science 363(6428). 744-747 (2019) doi: 10.1126/science.aav8912
  • Kujirai T, Ehara H, Fujino Y, et al.
    Structural basis of the nucleosome transition during RNA polymerase II passage.
    Science (2018) doi: 10.1126/science.aau9904
  • Shigematsu H, Imasaki T, Doki C, et al.
    Structural insight into microtubule stabilization and kinesin inhibition by Tau-family MAPs.
    The Journal of Cell Biology (2018) doi: 10.1083/jcb.201711182
  • Shima T, Morikawa M, Kaneshiro J, et al.
    Kinesin-binding–triggered conformation switching of microtubules contributes to polarized transport.
    The Journal of Cell Biology 217(12).4164-4183 (2018) doi: 10.1083/jcb.201711178
  • Ohbayashi N, Murayama K, Kato-Murayama M, et al.
    Structural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib.
    ChemistryOpen 7(9). 721-727 (2018) doi: 10.1002/open.201800177
  • Kasuya G, Nakane T, Yokoyama T, et al.
    Cryo-EM structures of the human volume-regulated anion channel LRRC8.
    Nature Structural & Molecular Biology 25 (9). 797-804 (2018) doi: 10.1038/s41594-018-0109-6
  • Yamagata A, Miyazaki Y, Yokoi N, et al.
    Structural basis of epilepsy-related ligand–receptor complex LGI1–ADAM22.
    Nature communications 9(1). 1546 (2018) doi: 10.1038/s41467-018-03947-w
  • Matsuda T, Ito T, Takemoto C, et al.
    Cell-free synthesis of functional antibody fragments to provide a structural basis for antibody-antigen interaction.
    PLoS One 13(2) e0193158 (2018) doi:10.1371/journal.pone.0193158
  • Hosaka T, Okazaki M, Kimura-Someya T, et al.
    Crystal structural characterization reveals novel oligomeric interactions of human voltage-dependent anion channel 1.
    Protein Science 26(9). 1749-1758 (2017) doi:10.1002/pro.3211
  • Shinoda T, Shinya N, Ito K, et al.
    Structural basis for disruption of claudin assembly in tight junctions by an enterotoxin.
    Scientific Reports 6. 33632 (2016) doi:10.1038/srep33632
  • Masuda M, Uno Y, Ohbayashi N, et al.
    TNIK inhibition abrogates colorectal cancer stemness.
    Nature Communications 7. 12586 (2016) doi:10.1038/ncomms12586

All Publications